Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 25 of 718
Double-click species to show assemblies
Operations
 File Organism Size Type Description
Aedes-aegypti-LVP_AGWG_CHROMOSOMES_AaegL5.fa.gz Aedes aegypti 389.25 MB Chromosomes LVP_AGWG strain genomic chromosomes sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_CONTIGS_Aag2.fa.gz Aedes aegypti 529.41 MB Contigs Aag2 cell line strain genomic contigs sequences, Aag2 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLDS_AaegL5.fa.gz Aedes aegypti 25.1 MB Scaffolds LVP_AGWG strain genomic scaffolds sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_SCAFFOLDS_Aag2.fa.gz Aedes aegypti 529.44 MB Scaffolds Aag2 cell line strain genomic scaffolds sequences, Aag2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-LVP_AGWG_PEPTIDES_AaegL5.2.fa.gz Aedes aegypti 5.64 MB Peptides LVP_AGWG strain peptide sequences, AaegL5.2 geneset.
Aedes-aegypti-LVP_AGWG_TRANSCRIPTS_AaegL5.2.fa.gz Aedes aegypti 18.54 MB Transcripts LVP_AGWG strain transcript sequences, AaegL5.2 geneset.
Aedes-aegypti-LVP_AGWG_BASEFEATURES_AaegL5.2.gff3.gz Aedes aegypti 5.12 MB Basefeatures LVP_AGWG strain AaegL5.2 geneset in GFF3 format.
Aedes-aegypti-LVP_AGWG_BASEFEATURES_AaegL5.2.gtf.gz Aedes aegypti 4.09 MB Basefeatures LVP_AGWG strain AaegL5.2 geneset in GTF (v2.2) format.
Aedes-aegypti_EST-CLIPPED_2012-12.fa.gz Aedes aegypti 64.7 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Aedes-aegypti_EST-RAW_2012-12.fa.gz Aedes aegypti 64.87 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Aedes-aegypti-Liverpool_BAC-ENDS_2012-12.fa.gz Aedes aegypti 28.21 MB BAC ends Liverpool strain BAC end sequences from the NCBI trace archive as of December 2012.
Aedes-aegypti-Aag2-cell-line_CONTIG2SCAFFOLD_Aag2.agp.gz Aedes aegypti 28.36 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes aegypti Aag2 cell line strain, Aag2 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLD2CHROMOSOME_AaegL5.agp.gz Aedes aegypti 18.17 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Aedes aegypti LVP_AGWG strain, AaegL5 assembly.
Aedes-aegypti-Liverpool_MAPPINGS_AaegL3.5-AaegL5.1.txt Aedes aegypti 1.11 MB ID Mapping Stable ID mapping between genesets AaegL3.5 and AaegL5.1
Aedes-aegypti-Liverpool_MAPPINGS_AaegL3.3-AaegL3.4.txt Aedes aegypti 104.44 KB ID Mapping Stable ID mapping between genesets AaegL3.3 and AaegL3.4 (RNA gene update)
Aedes-aegypti-Liverpool_MODIFICATIONS_AaegL2.2-AaegL3.1-ncRNA.txt Aedes aegypti 61.66 KB ID Mapping Liverpool strain gene prediction stable identifier mapping for ncRNA from the AaegL2.2 to AaegL3.1 geneset
Aedes-aegypti-Aag2-cell-line_REPEATS.lib Aedes aegypti 1.7 MB RepeatMasker library RepeatMasker library file of repeats for Aedes aegypti, Aag2 cell line strain.
Aedes-aegypti-Liverpool_REPEATS.lib Aedes aegypti 5.27 MB RepeatMasker library RepeatMasker library file of repeats for Aedes aegypti, Liverpool strain.
Aedes-aegypti-LVP_AGWG_REPEATFEATURES_AaegL5.gff3.gz Aedes aegypti 107.2 MB Repeat features LVP_AGWG strain AaegL5 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti-Aag2-cell-line_REPEATFEATURES_Aag2.gff3.gz Aedes aegypti 83.78 MB Repeat features Aag2 cell line strain Aag2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti_EXPR-STATS_VB-2019-06.txt.gz Aedes aegypti 33.19 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Aedes-albopictus-C6-36-cell-line_CONTIGS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Contigs C6/36 cell line strain genomic contigs sequences, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIGS_AaloF1.fa.gz Aedes albopictus 516.78 MB Contigs Foshan strain genomic contigs sequences, AaloF1 assembly.
Aedes-albopictus-C6-36-cell-line_SCAFFOLDS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Scaffolds C6/36 cell line strain genomic scaffolds sequences, GCA_001876365.2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-albopictus-Foshan_SCAFFOLDS_AaloF1.fa.gz Aedes albopictus 518.01 MB Scaffolds Foshan strain genomic scaffolds sequences, AaloF1 assembly (not repeat-masked).

Pages